Variant report

Variant	rs13340616
Chromosome Location	chr8:119881550-119881551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11776000	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11776031	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11779357	0.89[ASN][1000 genomes]
rs11784196	0.89[ASN][1000 genomes]
rs11997801	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13340559	0.80[AFR][1000 genomes]
rs17751221	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17758192	0.83[ASN][1000 genomes]
rs2035978	0.95[ASN][1000 genomes]
rs2875844	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56112113	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57152492	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57450365	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57898934	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58159878	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58396245	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59095144	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73711934	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs903612	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs903613	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs903614	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119877400-119883400	Enhancers	Fetal Intestine Large	intestine
2	chr8:119877600-119883600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:119878000-119883200	Enhancers	Fetal Intestine Small	intestine
4	chr8:119879000-119889800	Weak transcription	Pancreas	Pancrea
5	chr8:119879200-119889600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:119879400-119885200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:119879400-119890000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:119880400-119881800	Weak transcription	Fetal Kidney	kidney
9	chr8:119880400-119881800	Weak transcription	Fetal Lung	lung
10	chr8:119880400-119882400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr8:119880400-119884200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:119880600-119882200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:119880600-119882200	Weak transcription	Aorta	Aorta
14	chr8:119880600-119884200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:119880600-119884400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:119880600-119884800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:119880600-119885200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:119880800-119882000	Weak transcription	Small Intestine	intestine
19	chr8:119880800-119883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:119880800-119883800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:119880800-119883800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:119880800-119884200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:119880800-119889600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr8:119881400-119881800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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