Variant report

Variant	rs13340559
Chromosome Location	chr8:119883396-119883397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1023968	0.89[CHB][hapmap]
rs11781704	0.94[CHB][hapmap];0.86[CHD][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs13340616	0.80[AFR][1000 genomes]
rs1485308	0.94[CHB][hapmap]
rs1564859	1.00[MEX][hapmap]
rs17757600	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35617243	0.90[ASN][1000 genomes]
rs6987473	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6987559	0.84[CHB][hapmap]
rs72680339	0.80[ASN][1000 genomes]
rs72680366	0.81[AMR][1000 genomes]
rs72680370	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72680375	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7820642	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13340559	CECR5	trans	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119877400-119883400	Enhancers	Fetal Intestine Large	intestine
2	chr8:119877600-119883600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:119879000-119889800	Weak transcription	Pancreas	Pancrea
4	chr8:119879200-119889600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:119879400-119885200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:119879400-119890000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:119880400-119884200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:119880600-119884200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:119880600-119884400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:119880600-119884800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:119880600-119885200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:119880800-119883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:119880800-119883800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:119880800-119883800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:119880800-119884200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:119880800-119889600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr8:119882400-119889800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:119883200-119884200	Weak transcription	Fetal Intestine Small	intestine
19	chr8:119883200-119887400	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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