Variant report

Variant	rs6987473
Chromosome Location	chr8:119909831-119909832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:119890715..119891617-chr8:119908895..119909909,3	MCF-7	breast:
2	chr8:119901946..119903477-chr8:119908187..119910521,2	MCF-7	breast:
3	chr8:119909629..119911189-chr8:119934739..119937482,2	MCF-7	breast:
4	chr8:119909435..119912198-chr8:119913488..119916244,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1023968	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs11781704	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13340559	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1485308	1.00[CHB][hapmap]
rs1564859	0.84[MEX][hapmap]
rs17757600	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1963992	0.87[ASN][1000 genomes]
rs35617243	0.86[ASN][1000 genomes]
rs6469786	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6987559	0.90[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs72680366	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72680370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680375	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7820642	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs7834745	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119908200-119910000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:119908200-119910200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:119908200-119910400	Enhancers	NHLF	lung
4	chr8:119908200-119910600	Enhancers	Hela-S3	cervix
5	chr8:119908200-119915200	Enhancers	Fetal Intestine Small	intestine
6	chr8:119908400-119910000	Enhancers	Osteobl	bone
7	chr8:119908400-119910200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:119908400-119910200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:119908400-119910200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:119908400-119910200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:119908400-119910200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:119908400-119910200	Enhancers	NHDF-Ad	bronchial
13	chr8:119908400-119910200	Enhancers	NHEK	skin
14	chr8:119908400-119910600	Enhancers	HMEC	breast
15	chr8:119908600-119910000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:119908600-119911000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr8:119908800-119910000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr8:119908800-119910000	Enhancers	HUVEC	blood vessel
19	chr8:119909000-119912000	Enhancers	Fetal Intestine Large	intestine
20	chr8:119909200-119914400	Weak transcription	Aorta	Aorta
21	chr8:119909200-119916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:119909400-119910200	Enhancers	Liver	Liver
23	chr8:119909600-119910000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:119909600-119910200	Enhancers	Stomach Mucosa	stomach
25	chr8:119909600-119910200	Enhancers	A549	lung
26	chr8:119909800-119910000	Enhancers	Duodenum Mucosa	Duodenum
27	chr8:119909800-119910000	Enhancers	Pancreas	Pancrea
28	chr8:119909800-119910000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr8:119909800-119910000	Enhancers	Small Intestine	intestine
30	chr8:119909800-119914400	Weak transcription	HSMM	muscle

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