Variant report

Variant	rs2036531
Chromosome Location	chr15:78727218-78727219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11072767	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12441256	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1847528	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2055587	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2230940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568484	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2656060	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2656064	1.00[AFR][1000 genomes]
rs2656066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2656067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2958720	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886569	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886570	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4887060	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168018	1.00[AMR][1000 genomes]
rs73463009	1.00[AMR][1000 genomes]
rs73463024	1.00[AMR][1000 genomes]
rs73463098	1.00[AMR][1000 genomes]
rs8026728	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs905741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs905742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9788758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9972290	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78720800-78728400	Weak transcription	K562	blood
3	chr15:78725000-78729400	Weak transcription	Liver	Liver
4	chr15:78726400-78729600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:78726600-78727800	Enhancers	HepG2	liver
6	chr15:78726800-78729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:78726800-78729400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr15:78726800-78729400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:78726800-78729600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:78726800-78729600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr15:78727000-78729400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:78727200-78729200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:78727200-78729600	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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