Variant report

Variant	rs4886569
Chromosome Location	chr15:78763809-78763810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78763504..78765233-chr15:78857709..78859471,2	MCF-7	breast:
2	chr15:78762628..78765009-chr15:78768296..78770207,2	K562	blood:
3	chr15:78761259..78764170-chr15:78766967..78768485,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169684	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11072767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12441256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1847528	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2055587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2230940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568484	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568491	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568492	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2656060	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2656064	0.93[AFR][1000 genomes]
rs2656066	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2656067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28453862	0.81[AFR][1000 genomes]
rs2938672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2958720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886570	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4887060	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495302	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168018	1.00[AMR][1000 genomes]
rs73463009	1.00[AMR][1000 genomes]
rs73463024	1.00[AMR][1000 genomes]
rs73463098	1.00[AMR][1000 genomes]
rs8026728	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs905741	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs905742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9788758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9972290	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	esv1806890	chr15:78744695-78786064	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78732200-78799400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:78741200-78781800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:78749000-78764800	Weak transcription	Pancreas	Pancrea
4	chr15:78749000-78767800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:78749800-78764600	Weak transcription	Small Intestine	intestine
6	chr15:78749800-78769600	Weak transcription	Right Ventricle	heart
7	chr15:78750400-78773800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78751000-78793200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:78752000-78769000	Weak transcription	Psoas Muscle	Psoas
10	chr15:78754000-78789400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr15:78754400-78787600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:78754600-78771200	Strong transcription	HepG2	liver
13	chr15:78754600-78773600	Strong transcription	A549	lung
14	chr15:78754600-78793400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:78754800-78771600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:78754800-78793800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr15:78755000-78772800	Strong transcription	Hela-S3	cervix
18	chr15:78755000-78787000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:78755000-78787000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:78755000-78793800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:78755000-78794400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:78755200-78772200	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr15:78755200-78772600	Strong transcription	Primary B cells from cord blood	blood
24	chr15:78755200-78772600	Strong transcription	Osteobl	bone
25	chr15:78755200-78772800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:78755200-78773800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:78755200-78779000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:78755200-78783800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr15:78755200-78787000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:78755200-78792600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:78755200-78793400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:78755200-78793600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr15:78755200-78793800	Strong transcription	Fetal Thymus	thymus
34	chr15:78755200-78794000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:78755200-78794600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:78755400-78765800	Strong transcription	Thymus	Thymus
37	chr15:78755400-78766800	Strong transcription	HUVEC	blood vessel
38	chr15:78755400-78767000	Strong transcription	Fetal Lung	lung
39	chr15:78755400-78772800	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr15:78755400-78779000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:78755400-78783200	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr15:78755400-78791400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:78755400-78791400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr15:78755400-78791800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr15:78755400-78792600	Strong transcription	Fetal Muscle Leg	muscle
46	chr15:78755400-78793600	Strong transcription	Liver	Liver
47	chr15:78755600-78772200	Strong transcription	GM12878-XiMat	blood
48	chr15:78755800-78767000	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:78756000-78766200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:78756000-78766800	Strong transcription	NH-A	brain

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