Variant report

Variant	rs2037107
Chromosome Location	chr2:11299473-11299474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:11299440-11299590	WERI-Rb-1	eye:	n/a	n/a
2	MAX	chr2:11299455-11299663	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:11281751..11284886-chr2:11297524..11300399,3	MCF-7	breast:
2	chr2:11295929..11299678-chr2:11300609..11303606,5	K562	blood:
3	chr2:11294400..11297941-chr2:11298345..11302243,10	MCF-7	breast:
4	chr2:11294434..11297299-chr2:11297637..11299832,3	K562	blood:

Variant related genes	Relation type
PQLC3	TF binding region
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11683786	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11891302	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11892387	0.98[ASN][1000 genomes]
rs11895098	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12615623	0.82[CEU][hapmap]
rs12995564	0.82[CEU][hapmap]
rs13000987	0.83[CEU][hapmap]
rs13022766	0.83[CEU][hapmap]
rs13027444	0.98[ASN][1000 genomes]
rs2271622	0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4668715	0.97[ASN][1000 genomes]
rs4668716	0.97[ASN][1000 genomes]
rs4668717	0.81[ASN][1000 genomes]
rs4668718	0.81[ASN][1000 genomes]
rs4669695	0.83[CEU][hapmap]
rs4669697	0.81[ASN][1000 genomes]
rs7556705	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7581322	0.83[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520789	chr2:11259067-11312224	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11299600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:11296200-11329400	Weak transcription	Gastric	stomach
3	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
4	chr2:11296400-11301000	Weak transcription	GM12878-XiMat	blood
5	chr2:11296400-11303600	Weak transcription	HSMMtube	muscle
6	chr2:11296400-11306400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:11296400-11307200	Weak transcription	Thymus	Thymus
8	chr2:11296400-11308600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:11296400-11309600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:11296400-11314200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:11296400-11314800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:11296400-11315200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:11296400-11315200	Weak transcription	Brain Substantia Nigra	brain
14	chr2:11296400-11315400	Weak transcription	Brain Angular Gyrus	brain
15	chr2:11296400-11318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:11296600-11300200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:11296600-11300600	Weak transcription	Fetal Intestine Small	intestine
18	chr2:11296600-11301000	Weak transcription	Fetal Thymus	thymus
19	chr2:11296600-11301800	Weak transcription	Primary T cells from cord blood	blood
20	chr2:11296600-11303600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:11296600-11304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:11296600-11306200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:11296600-11315200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:11296600-11315200	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:11296600-11315200	Weak transcription	NHDF-Ad	bronchial
26	chr2:11296600-11319200	Weak transcription	Fetal Lung	lung
27	chr2:11296800-11300800	Weak transcription	Primary B cells from cord blood	blood
28	chr2:11296800-11303600	Weak transcription	Left Ventricle	heart
29	chr2:11296800-11303800	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:11296800-11304200	Weak transcription	Esophagus	oesophagus
31	chr2:11296800-11307800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr2:11296800-11308000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr2:11296800-11309200	Weak transcription	Ovary	ovary
34	chr2:11296800-11315000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr2:11296800-11315200	Weak transcription	Brain Anterior Caudate	brain
36	chr2:11296800-11318200	Weak transcription	A549	lung
37	chr2:11296800-11379800	Weak transcription	Small Intestine	intestine
38	chr2:11297000-11300800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr2:11297000-11300800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr2:11297000-11301600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr2:11297000-11303600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:11297000-11303800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr2:11297000-11305200	Weak transcription	Colonic Mucosa	Colon
44	chr2:11297000-11305800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr2:11297200-11300600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr2:11297200-11300800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr2:11297200-11300800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr2:11297200-11301000	Weak transcription	Adipose Nuclei	Adipose
49	chr2:11297200-11301000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr2:11297200-11303600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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