Variant report

Variant	rs2037154
Chromosome Location	chr12:20893052-20893053
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:20886731..20889299-chr12:20891417..20893433,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10505869	0.85[EUR][1000 genomes]
rs10841614	0.87[EUR][1000 genomes]
rs10841617	0.85[EUR][1000 genomes]
rs10841645	0.83[ASN][1000 genomes]
rs11045455	0.83[EUR][1000 genomes]
rs11045458	0.80[EUR][1000 genomes]
rs11045459	0.82[EUR][1000 genomes]
rs11045505	0.82[ASN][1000 genomes]
rs11525531	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2090272	0.83[EUR][1000 genomes]
rs2090274	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2090275	0.84[EUR][1000 genomes]
rs2090276	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2102737	0.83[EUR][1000 genomes]
rs2417859	0.83[EUR][1000 genomes]
rs2900456	0.86[EUR][1000 genomes]
rs4141475	0.82[ASN][1000 genomes]
rs4762776	0.82[EUR][1000 genomes]
rs4762779	0.83[EUR][1000 genomes]
rs4762786	0.82[ASN][1000 genomes]
rs7295794	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7300887	0.80[EUR][1000 genomes]
rs7309696	0.82[ASN][1000 genomes]
rs7315732	0.80[EUR][1000 genomes]
rs7964850	0.85[EUR][1000 genomes]
rs7968058	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv557704	chr12:20842041-20893980	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3391629	chr12:20866256-20908722	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1039951	chr12:20880417-20941238	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv17347	chr12:20892854-21029179	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20892800-20922200	Weak transcription	Aorta	Aorta

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