Variant report

Variant	rs2037385
Chromosome Location	chr15:54909888-54909889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10152907	0.90[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10152979	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10518774	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11071089	0.85[CEU][hapmap]
rs11071091	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11071092	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11071093	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856235	0.93[ASN][1000 genomes]
rs11857282	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12592949	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1589316	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1851006	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2414324	0.83[EUR][1000 genomes]
rs2414325	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2414326	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2899547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3848140	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9672681	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9673119	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9920919	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv904237	chr15:54888537-54927484	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv569509	chr15:54888537-54932716	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv569518	chr15:54898631-54954864	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54900000-54920600	Weak transcription	Aorta	Aorta
2	chr15:54906200-54910000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:54906400-54916000	Weak transcription	Fetal Lung	lung
4	chr15:54907400-54915800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:54909600-54911400	Enhancers	Fetal Intestine Large	intestine
6	chr15:54909800-54912400	Enhancers	HepG2	liver

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