Variant report

Variant	rs2414324
Chromosome Location	chr15:54881180-54881181
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10152907	0.89[ASN][1000 genomes]
rs10152979	0.89[ASN][1000 genomes]
rs10518774	0.83[EUR][1000 genomes]
rs11071089	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11071091	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071092	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11071093	0.83[EUR][1000 genomes]
rs11857282	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12592949	0.81[EUR][1000 genomes]
rs1850998	0.83[ASN][1000 genomes]
rs2037385	0.83[EUR][1000 genomes]
rs2414325	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2414326	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2681956	0.86[ASN][1000 genomes]
rs2899547	0.80[EUR][1000 genomes]
rs9672681	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9673119	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9920919	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv569508	chr15:54876212-54904782	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv526413	chr15:54876423-54904782	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54871200-54882400	Weak transcription	Fetal Lung	lung
2	chr15:54880800-54887600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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