Variant report

Variant	rs1850998
Chromosome Location	chr15:54871061-54871062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10152437	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2414324	0.83[ASN][1000 genomes]
rs2553218	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2553227	0.84[ASN][1000 genomes]
rs2681956	0.84[ASN][1000 genomes]
rs734954	0.80[ASN][1000 genomes]
rs746321	0.84[ASN][1000 genomes]
rs8028630	0.84[ASN][1000 genomes]
rs8032415	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8039515	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs939389	0.85[ASN][1000 genomes]
rs939390	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1850998	UNC13C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54867600-54871200	Enhancers	Fetal Lung	lung
2	chr15:54870000-54879800	Weak transcription	Aorta	Aorta
3	chr15:54870600-54871200	Enhancers	Fetal Muscle Leg	muscle
4	chr15:54870800-54871200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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