Variant report

Variant	rs10152437
Chromosome Location	chr15:54858187-54858188
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10152907	0.81[CHB][hapmap]
rs10468008	0.96[CEU][hapmap]
rs10468009	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11071087	0.96[CEU][hapmap]
rs11639005	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs11639014	0.96[CEU][hapmap]
rs12443186	0.96[CEU][hapmap]
rs12902108	0.80[ASN][1000 genomes]
rs12916626	0.96[CEU][hapmap]
rs1356859	0.85[CEU][hapmap]
rs1402111	0.92[JPT][hapmap]
rs16974712	0.85[JPT][hapmap]
rs16974753	0.85[CEU][hapmap]
rs1818708	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1850998	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2414326	0.81[CHB][hapmap]
rs2456976	0.86[CEU][hapmap]
rs2553218	0.95[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2553227	0.92[JPT][hapmap]
rs2899546	0.86[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs34301708	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4109295	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs495769	0.85[CEU][hapmap]
rs533450	0.81[CEU][hapmap]
rs540090	0.86[CEU][hapmap]
rs546169	0.85[CEU][hapmap]
rs589611	0.85[CEU][hapmap]
rs605869	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs640442	0.81[CEU][hapmap]
rs6493687	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7164826	0.92[JPT][hapmap]
rs7180226	0.92[JPT][hapmap]
rs746321	0.83[JPT][hapmap]
rs8025195	0.81[CEU][hapmap]
rs8028630	0.83[JPT][hapmap]
rs8032415	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8039515	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9302181	0.96[CEU][hapmap]
rs9920919	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54839800-54858800	Weak transcription	Fetal Lung	lung
3	chr15:54857200-54858200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:54857200-54859000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:54857400-54863800	Weak transcription	Primary hematopoietic stem cells	blood

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