Variant report

Variant	rs540090
Chromosome Location	chr15:54798561-54798562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10152437	0.86[CEU][hapmap]
rs10468008	0.89[CEU][hapmap]
rs10518767	0.84[CEU][hapmap]
rs11071072	0.92[CEU][hapmap]
rs11071087	0.89[CEU][hapmap]
rs11639005	0.89[CEU][hapmap]
rs11639014	0.89[CEU][hapmap]
rs12443186	0.89[CEU][hapmap]
rs12910464	0.81[AMR][1000 genomes]
rs12915430	0.85[CEU][hapmap]
rs12916571	0.85[CEU][hapmap]
rs12916626	0.89[CEU][hapmap]
rs1356858	0.85[CEU][hapmap]
rs16974753	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2456976	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2899546	1.00[CEU][hapmap]
rs4109295	1.00[CEU][hapmap]
rs4776234	0.81[CEU][hapmap]
rs495769	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs533450	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs537389	0.82[CEU][hapmap]
rs543451	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs546169	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs589611	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs605869	1.00[CEU][hapmap]
rs640442	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6493687	1.00[CEU][hapmap]
rs8026697	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8032415	0.89[CEU][hapmap]
rs8039515	0.89[CEU][hapmap]
rs9302181	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54777800-54810400	Weak transcription	Aorta	Aorta
2	chr15:54795400-54799400	Weak transcription	Fetal Lung	lung
3	chr15:54798200-54799000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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