Variant report

Variant	rs1356858
Chromosome Location	chr15:54785334-54785335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10518767	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11071072	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11071084	0.80[JPT][hapmap]
rs11636573	0.82[CEU][hapmap];0.80[JPT][hapmap]
rs11857643	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12438766	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12907044	0.80[JPT][hapmap]
rs12915430	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12916571	0.96[CEU][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs16974753	0.84[CEU][hapmap]
rs1814785	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2414321	0.80[JPT][hapmap]
rs2456976	0.85[CEU][hapmap]
rs2899541	0.80[JPT][hapmap]
rs2899546	0.85[CEU][hapmap]
rs34800150	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35656729	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36141778	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4109295	0.85[CEU][hapmap]
rs4354874	0.80[JPT][hapmap]
rs4457946	0.80[JPT][hapmap]
rs4506836	0.80[JPT][hapmap]
rs4774695	0.80[JPT][hapmap]
rs4774696	0.80[CEU][hapmap]
rs4776233	0.80[JPT][hapmap]
rs4776234	0.96[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs495769	0.88[CEU][hapmap]
rs533450	0.85[CEU][hapmap]
rs540090	0.85[CEU][hapmap]
rs543451	0.81[EUR][1000 genomes]
rs546169	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs589611	0.88[CEU][hapmap]
rs605869	0.88[CEU][hapmap]
rs640442	0.85[CEU][hapmap]
rs6493687	0.88[CEU][hapmap]
rs8038538	0.80[JPT][hapmap]
rs885204	0.81[CEU][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv457150	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv569501	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv457151	chr15:54699197-54787358	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv569502	chr15:54699197-54787358	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv904232	chr15:54703195-54787358	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv904233	chr15:54703195-54797177	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv457153	chr15:54705902-54795040	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv569504	chr15:54705902-54795040	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv904235	chr15:54710873-54795040	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv569506	chr15:54715550-54796592	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv569507	chr15:54730223-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54775200-54794000	Weak transcription	Fetal Lung	lung
2	chr15:54777800-54810400	Weak transcription	Aorta	Aorta
3	chr15:54785000-54785600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr15:54785200-54785400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:54785200-54791000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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