Variant report

Variant	rs16974753
Chromosome Location	chr15:54834242-54834243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10152437	0.85[CEU][hapmap]
rs10468008	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518767	0.83[CEU][hapmap]
rs11071072	0.92[CEU][hapmap]
rs11071087	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11639005	0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs11639014	0.88[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12437724	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs12443186	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12900512	0.82[ASN][1000 genomes]
rs12908706	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12909682	0.95[CHB][hapmap]
rs12910464	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12914472	0.95[CHB][hapmap]
rs12915430	0.84[CEU][hapmap]
rs12916571	0.84[CEU][hapmap]
rs12916626	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1356858	0.84[CEU][hapmap]
rs1818705	0.95[CHB][hapmap]
rs1851007	0.82[ASN][1000 genomes]
rs1851008	0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.82[ASN][1000 genomes]
rs1973747	0.81[ASN][1000 genomes]
rs2056342	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs2456976	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2899546	1.00[CEU][hapmap]
rs4109295	1.00[CEU][hapmap]
rs4776234	0.81[CEU][hapmap]
rs495769	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs533450	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs537389	0.84[CEU][hapmap]
rs540090	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs543451	0.82[EUR][1000 genomes]
rs546169	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs589611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs605869	1.00[CEU][hapmap]
rs640442	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6493687	1.00[CEU][hapmap]
rs6493690	0.82[ASN][1000 genomes]
rs7163424	0.80[CHB][hapmap]
rs8023595	0.91[CHB][hapmap]
rs8023918	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs8026697	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8032415	0.88[CEU][hapmap]
rs8039515	0.88[CEU][hapmap]
rs8041282	1.00[CHB][hapmap]
rs8042341	0.95[CHB][hapmap]
rs9302181	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16974753	UNC13C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta

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