Variant report

Variant	rs11071072
Chromosome Location	chr15:54732571-54732572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10468008	0.82[CEU][hapmap]
rs10518767	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11071082	0.81[JPT][hapmap]
rs11071084	0.82[JPT][hapmap]
rs11071087	0.82[CEU][hapmap]
rs11636573	0.82[JPT][hapmap]
rs11639005	0.82[CEU][hapmap]
rs11639014	0.82[CEU][hapmap]
rs11857643	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12148262	0.81[JPT][hapmap]
rs12437618	0.81[JPT][hapmap]
rs12438766	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12443186	0.82[CEU][hapmap]
rs12907044	0.82[JPT][hapmap]
rs12911850	0.81[GIH][hapmap]
rs12915430	0.84[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12916571	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs12916626	0.82[CEU][hapmap]
rs1356858	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs16974753	0.92[CEU][hapmap]
rs1814785	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.87[ASN][1000 genomes]
rs2414308	0.81[JPT][hapmap]
rs2414321	0.82[JPT][hapmap]
rs2456976	0.92[CEU][hapmap]
rs2899541	0.82[JPT][hapmap]
rs2899546	0.92[CEU][hapmap]
rs34800150	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35656729	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36141778	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4109295	0.92[CEU][hapmap]
rs4354874	0.82[JPT][hapmap]
rs4457946	0.82[JPT][hapmap]
rs4506836	0.82[JPT][hapmap]
rs4774695	0.82[JPT][hapmap]
rs4774696	0.81[JPT][hapmap]
rs4776231	0.81[JPT][hapmap]
rs4776233	0.82[JPT][hapmap]
rs4776234	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs495769	0.92[CEU][hapmap]
rs533450	0.89[CEU][hapmap]
rs540090	0.92[CEU][hapmap]
rs546169	0.92[CEU][hapmap]
rs589611	0.92[CEU][hapmap]
rs605869	0.92[CEU][hapmap]
rs640442	0.89[CEU][hapmap]
rs6493687	0.92[CEU][hapmap]
rs7168137	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8032415	0.82[CEU][hapmap]
rs8038538	0.82[JPT][hapmap]
rs8039515	0.81[CEU][hapmap]
rs885203	0.81[JPT][hapmap]
rs885204	0.82[JPT][hapmap]
rs885356	0.80[CEU][hapmap]
rs9302181	0.82[CEU][hapmap]
rs937896	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv904230	chr15:54685463-54779312	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv457150	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569501	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv457151	chr15:54699197-54787358	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv569502	chr15:54699197-54787358	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv904231	chr15:54703195-54771880	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv904232	chr15:54703195-54787358	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv904233	chr15:54703195-54797177	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv569503	chr15:54705902-54771880	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv457153	chr15:54705902-54795040	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv569504	chr15:54705902-54795040	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv904234	chr15:54710873-54779312	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv904235	chr15:54710873-54795040	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv569505	chr15:54715550-54775229	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv569506	chr15:54715550-54796592	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv569507	chr15:54730223-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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