Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10152437	0.81[CEU][hapmap]
rs10468008	0.85[CEU][hapmap]
rs10518767	0.81[CEU][hapmap]
rs11071072	0.89[CEU][hapmap]
rs11071087	0.85[CEU][hapmap];0.82[GIH][hapmap]
rs11639005	0.85[CEU][hapmap]
rs11639014	0.85[CEU][hapmap];0.82[GIH][hapmap]
rs12443186	0.85[CEU][hapmap]
rs12915430	0.81[CEU][hapmap]
rs12916571	0.81[CEU][hapmap]
rs12916626	0.85[CEU][hapmap]
rs1356858	0.85[CEU][hapmap]
rs16974753	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2456976	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2899546	0.96[CEU][hapmap]
rs4109295	0.96[CEU][hapmap]
rs4776234	0.81[CEU][hapmap]
rs495769	0.96[CEU][hapmap];0.89[GIH][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs533450	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs537389	0.85[CEU][hapmap]
rs540090	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs543451	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs546169	0.96[CEU][hapmap];0.86[GIH][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs589611	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs605869	0.96[CEU][hapmap]
rs643105	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6493687	0.96[CEU][hapmap]
rs8032415	0.85[CEU][hapmap]
rs8039515	0.84[CEU][hapmap]
rs9302181	0.85[CEU][hapmap];0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs640442	UNC13C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54777800-54810400	Weak transcription	Aorta	Aorta
2	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
3	chr15:54809000-54814000	Weak transcription	Ovary	ovary
4	chr15:54809600-54811200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:54809600-54811200	Enhancers	Fetal Intestine Small	intestine
6	chr15:54809600-54811200	Enhancers	Fetal Kidney	kidney
7	chr15:54809600-54811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:54809600-54814400	Enhancers	Fetal Lung	lung
9	chr15:54809800-54811600	Enhancers	Primary hematopoietic stem cells	blood
10	chr15:54809800-54811800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:54810000-54810400	Enhancers	Colon Smooth Muscle	Colon
12	chr15:54810200-54812000	Enhancers	Adipose Nuclei	Adipose

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