Variant report

Variant	rs537389
Chromosome Location	chr15:54798853-54798854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16974753	0.84[CEU][hapmap]
rs2456976	0.82[CEU][hapmap]
rs2899546	0.82[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2947007	0.81[AMR][1000 genomes]
rs4109295	0.82[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap]
rs495769	0.82[CEU][hapmap];0.86[TSI][hapmap]
rs533450	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs540090	0.82[CEU][hapmap]
rs546169	0.82[CEU][hapmap]
rs589611	0.81[CEU][hapmap]
rs605869	0.82[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap]
rs640442	0.85[CEU][hapmap]
rs6493687	0.82[CEU][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap]
rs8032415	0.86[JPT][hapmap]
rs8039515	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54777800-54810400	Weak transcription	Aorta	Aorta
2	chr15:54795400-54799400	Weak transcription	Fetal Lung	lung
3	chr15:54798200-54799000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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