Variant report

Variant	rs8039515
Chromosome Location	chr15:54847509-54847510
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10152437	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10152907	0.86[CHB][hapmap]
rs10468008	1.00[CEU][hapmap]
rs10468009	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071072	0.81[CEU][hapmap]
rs11071087	1.00[CEU][hapmap]
rs11636573	0.81[CEU][hapmap]
rs11639005	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11639014	1.00[CEU][hapmap]
rs12443186	1.00[CEU][hapmap]
rs12595229	0.81[CEU][hapmap]
rs12902108	0.88[ASN][1000 genomes]
rs12916626	1.00[CEU][hapmap]
rs1356859	0.88[CEU][hapmap]
rs16974753	0.88[CEU][hapmap]
rs1818708	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1850998	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2414326	0.85[CHB][hapmap]
rs2456976	0.89[CEU][hapmap]
rs2553218	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2899546	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34301708	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4109295	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4641682	0.81[CEU][hapmap]
rs4776231	0.80[CEU][hapmap]
rs495769	0.88[CEU][hapmap]
rs533450	0.84[CEU][hapmap]
rs537389	0.86[JPT][hapmap]
rs540090	0.89[CEU][hapmap]
rs546169	0.88[CEU][hapmap]
rs589611	0.88[CEU][hapmap]
rs605869	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs640442	0.84[CEU][hapmap]
rs6493687	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8023474	0.81[CEU][hapmap]
rs8025195	0.84[CEU][hapmap]
rs8032415	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs885203	0.81[CEU][hapmap]
rs885204	0.81[CEU][hapmap]
rs9302181	1.00[CEU][hapmap]
rs9920919	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54839800-54858800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links