Variant report

Variant	rs12915430
Chromosome Location	chr15:54774076-54774077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10518767	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11071072	0.84[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]
rs11071082	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs11071084	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs11636573	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs11857643	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11858004	0.81[CEU][hapmap]
rs12148262	0.85[JPT][hapmap]
rs12437618	0.85[JPT][hapmap]
rs12438766	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12595229	0.81[CEU][hapmap]
rs12907044	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs12916571	1.00[CEU][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1356858	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16974753	0.84[CEU][hapmap]
rs1814785	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[ASN][1000 genomes]
rs2414308	0.85[JPT][hapmap]
rs2414321	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs2456976	0.85[CEU][hapmap]
rs2899541	0.85[JPT][hapmap]
rs2899546	0.85[CEU][hapmap]
rs34800150	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35656729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36141778	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4109295	0.85[CEU][hapmap]
rs4354874	0.85[JPT][hapmap]
rs4457946	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs4506836	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs4641682	0.81[CEU][hapmap]
rs4774695	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs4774696	0.85[JPT][hapmap]
rs4776231	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs4776233	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs4776234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495769	0.85[CEU][hapmap]
rs533450	0.81[CEU][hapmap]
rs540090	0.85[CEU][hapmap]
rs546169	0.85[CEU][hapmap]
rs589611	0.84[CEU][hapmap]
rs605869	0.85[CEU][hapmap]
rs640442	0.81[CEU][hapmap]
rs6493687	0.85[CEU][hapmap]
rs7168137	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8023474	0.81[CEU][hapmap]
rs8023499	0.81[CEU][hapmap]
rs8024652	0.81[JPT][hapmap]
rs8038538	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs885203	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs885204	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs953464	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv904230	chr15:54685463-54779312	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv457150	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569501	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv457151	chr15:54699197-54787358	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv569502	chr15:54699197-54787358	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv904232	chr15:54703195-54787358	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv904233	chr15:54703195-54797177	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv457153	chr15:54705902-54795040	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv569504	chr15:54705902-54795040	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv904234	chr15:54710873-54779312	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv904235	chr15:54710873-54795040	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv569505	chr15:54715550-54775229	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv569506	chr15:54715550-54796592	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv569507	chr15:54730223-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv518418	chr15:54754185-54779312	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	nsv516912	chr15:54756628-54775229	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54769200-54777600	Weak transcription	Aorta	Aorta
2	chr15:54773400-54774200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links