Variant report

Variant	rs8023499
Chromosome Location	chr15:54774486-54774487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10518767	0.80[CEU][hapmap]
rs10744957	0.93[JPT][hapmap]
rs11071082	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11071083	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11071084	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11071085	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11071086	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11635482	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11636139	0.85[JPT][hapmap]
rs11636568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11636573	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11854826	0.84[EUR][1000 genomes]
rs11858004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148262	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs12437618	0.96[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12438368	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12439078	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12440914	0.83[EUR][1000 genomes]
rs12441633	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12442784	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442847	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592236	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12595197	0.83[EUR][1000 genomes]
rs12595217	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12595229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs12900373	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12904002	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12907044	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12912159	0.84[EUR][1000 genomes]
rs12912401	0.84[EUR][1000 genomes]
rs12913695	0.81[EUR][1000 genomes]
rs12915430	0.81[CEU][hapmap]
rs12916571	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs12917122	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1356859	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1402112	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851004	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2414308	0.96[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2414310	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2414315	0.93[JPT][hapmap]
rs2414321	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28390153	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28662893	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28675256	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2899541	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs34298302	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4267255	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4354874	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs4457946	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4506836	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4641682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473676	0.93[JPT][hapmap]
rs4774695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4774696	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4774697	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4776231	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4776233	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4776234	0.82[CEU][hapmap]
rs5017619	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5017620	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs5017621	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs5017622	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs556837	0.93[JPT][hapmap]
rs582890	0.93[JPT][hapmap]
rs62022362	0.99[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62022363	0.99[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6493681	0.85[JPT][hapmap]
rs6493682	0.93[JPT][hapmap]
rs6493685	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7178299	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7496778	0.84[EUR][1000 genomes]
rs8023474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8024652	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8025195	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8026344	0.84[EUR][1000 genomes]
rs8027041	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027984	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8030561	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8033437	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038538	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8038792	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs885203	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs885204	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv904230	chr15:54685463-54779312	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv457150	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv569501	chr15:54685463-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv457151	chr15:54699197-54787358	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv569502	chr15:54699197-54787358	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv904232	chr15:54703195-54787358	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv904233	chr15:54703195-54797177	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv457153	chr15:54705902-54795040	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv569504	chr15:54705902-54795040	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv904234	chr15:54710873-54779312	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv904235	chr15:54710873-54795040	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv569505	chr15:54715550-54775229	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv569506	chr15:54715550-54796592	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv569507	chr15:54730223-54787358	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv518418	chr15:54754185-54779312	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	nsv516912	chr15:54756628-54775229	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54769200-54777600	Weak transcription	Aorta	Aorta
2	chr15:54774200-54775000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr15:54774400-54774800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:54774400-54775000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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