Variant report

Variant	rs12908706
Chromosome Location	chr15:54858795-54858796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10152571	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10468008	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10851571	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11071087	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11071088	0.85[ASN][1000 genomes]
rs11639005	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11639014	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12437724	0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs12438101	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12443186	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs12900512	0.83[ASN][1000 genomes]
rs12909682	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12914472	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12916626	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs16974753	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs16974859	0.81[JPT][hapmap]
rs16974861	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs1818705	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1851001	0.86[ASN][1000 genomes]
rs1851007	0.83[ASN][1000 genomes]
rs1851008	0.92[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1973747	0.81[ASN][1000 genomes]
rs2056342	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2553218	0.80[EUR][1000 genomes]
rs2553222	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs2553223	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs2681969	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34301708	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35584128	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs589611	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs6493690	0.83[ASN][1000 genomes]
rs7163424	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs8023595	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8023918	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8040048	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8040060	0.81[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8040619	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8040774	0.80[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8041282	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs8041576	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8042341	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs9302181	0.85[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
2	chr15:54839800-54858800	Weak transcription	Fetal Lung	lung
3	chr15:54857200-54859000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:54857400-54863800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:54858200-54860200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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