Variant report
| Variant | rs2681969 |
|---|---|
| Chromosome Location | chr15:54866869-54866870 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10152571 | 0.89[ASN][1000 genomes] |
| rs10851571 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11071088 | 0.89[ASN][1000 genomes] |
| rs11639005 | 0.87[ASN][1000 genomes] |
| rs11639014 | 0.81[ASN][1000 genomes] |
| rs12438101 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12900512 | 0.80[ASN][1000 genomes] |
| rs12908706 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12909682 | 0.90[ASN][1000 genomes] |
| rs12914472 | 0.87[ASN][1000 genomes] |
| rs1818705 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1851001 | 0.90[ASN][1000 genomes] |
| rs1851007 | 0.82[ASN][1000 genomes] |
| rs1851008 | 0.82[ASN][1000 genomes] |
| rs1973747 | 0.82[ASN][1000 genomes] |
| rs2056342 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2553218 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs34301708 | 0.87[ASN][1000 genomes] |
| rs35584128 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6493690 | 0.82[ASN][1000 genomes] |
| rs8023595 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8023918 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8040048 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8040060 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8040619 | 0.84[EUR][1000 genomes] |
| rs8040774 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8041282 | 0.84[ASN][1000 genomes] |
| rs8041576 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs8042341 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038660 | chr15:54756184-55039913 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv904236 | chr15:54820897-54912439 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1039548 | chr15:54856965-54914519 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54811000-54869600 | Weak transcription | Aorta | Aorta |
