Variant report

Variant	rs7180226
Chromosome Location	chr15:54810651-54810652
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10152437	0.92[JPT][hapmap]
rs10152949	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1402111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16974691	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16974712	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2553218	0.84[JPT][hapmap]
rs2553227	1.00[JPT][hapmap]
rs7164826	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72738431	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs746321	0.92[JPT][hapmap]
rs8028630	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
2	chr15:54809000-54814000	Weak transcription	Ovary	ovary
3	chr15:54809600-54811200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:54809600-54811200	Enhancers	Fetal Intestine Small	intestine
5	chr15:54809600-54811200	Enhancers	Fetal Kidney	kidney
6	chr15:54809600-54811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:54809600-54814400	Enhancers	Fetal Lung	lung
8	chr15:54809800-54811600	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:54809800-54811800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:54810200-54812000	Enhancers	Adipose Nuclei	Adipose
11	chr15:54810400-54810800	Enhancers	Rectal Smooth Muscle	rectum
12	chr15:54810400-54811000	Enhancers	Aorta	Aorta
13	chr15:54810600-54811000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:54810600-54811000	Enhancers	Colon Smooth Muscle	Colon
15	chr15:54810600-54811000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr15:54810600-54811200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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