Variant report

Variant	rs2038272
Chromosome Location	chr14:65010932-65010933
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65007149..65009142-chr14:65009348..65011313,3	MCF-7	breast:
2	chr14:65006111..65008789-chr14:65009033..65011662,5	MCF-7	breast:
3	chr14:64967941..64976890-chr14:65001097..65012463,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10143672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063391	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11848114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432891	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12589307	0.83[EUR][1000 genomes]
rs12889677	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2045022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2123461	0.83[EUR][1000 genomes]
rs2123463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35790370	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7145155	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7151628	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7151976	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7154937	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8006695	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011038	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8018735	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8020083	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8020783	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65005800-65011600	Active TSS	Brain Anterior Caudate	brain
2	chr14:65005800-65012000	Active TSS	Brain Angular Gyrus	brain
3	chr14:65005800-65012000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:65006000-65011400	Active TSS	Colon Smooth Muscle	Colon
5	chr14:65006000-65012000	Active TSS	Brain Substantia Nigra	brain
6	chr14:65006400-65012000	Active TSS	Brain Cingulate Gyrus	brain
7	chr14:65006400-65012400	Active TSS	Brain Hippocampus Middle	brain
8	chr14:65008200-65011200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65008200-65011800	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr14:65008600-65016200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:65008800-65011600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr14:65009000-65011000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:65009000-65016200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:65009200-65011000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:65009200-65011400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr14:65009200-65011600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:65009200-65012200	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr14:65009400-65011200	Active TSS	NHLF	lung
19	chr14:65009400-65011600	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr14:65009400-65012000	Active TSS	H1 Cell Line	embryonic stem cell
21	chr14:65009400-65013000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:65009400-65016600	Weak transcription	Gastric	stomach
23	chr14:65009600-65011000	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr14:65009600-65011200	Active TSS	Brain Germinal Matrix	brain
25	chr14:65009600-65011400	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr14:65009600-65012000	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr14:65009600-65016200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:65009800-65012200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:65010200-65011000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:65010200-65015600	Weak transcription	Psoas Muscle	Psoas
31	chr14:65010400-65015800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:65010400-65015800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr14:65010400-65016600	Weak transcription	Aorta	Aorta
34	chr14:65010600-65011000	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr14:65010600-65011200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:65010600-65011200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:65010600-65011400	Enhancers	Rectal Smooth Muscle	rectum
38	chr14:65010600-65012000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr14:65010600-65012000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:65010600-65012000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:65010800-65011000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
42	chr14:65010800-65011000	Bivalent Enhancer	Fetal Kidney	kidney
43	chr14:65010800-65011400	Enhancers	NHDF-Ad	bronchial
44	chr14:65010800-65011600	Flanking Active TSS	A549	lung
45	chr14:65010800-65011800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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