Variant report

Variant	rs35790370
Chromosome Location	chr14:65013919-65013920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65006007..65010466-chr14:65011368..65016510,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10143672	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143906	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063391	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11848114	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432891	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12589307	0.85[EUR][1000 genomes]
rs12889677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542312	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2038272	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045022	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123461	0.85[EUR][1000 genomes]
rs2123463	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167765	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4313734	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7145155	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7151628	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7151976	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7154937	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8006695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011038	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8018735	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8020083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8020783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564907	chr14:65011509-65018663	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65008600-65016200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65009000-65016200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:65009400-65016600	Weak transcription	Gastric	stomach
4	chr14:65009600-65016200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:65010200-65015600	Weak transcription	Psoas Muscle	Psoas
6	chr14:65010400-65015800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:65010400-65015800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:65010400-65016600	Weak transcription	Aorta	Aorta
9	chr14:65011200-65015800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:65011400-65015800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:65011400-65016000	Weak transcription	NHDF-Ad	bronchial
12	chr14:65011600-65016000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:65011600-65016000	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:65011600-65016000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:65011600-65016000	Weak transcription	NHLF	lung
16	chr14:65011600-65016200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:65011800-65014000	Weak transcription	A549	lung
18	chr14:65011800-65015800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:65012000-65015400	Weak transcription	Brain Substantia Nigra	brain
20	chr14:65012000-65016000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:65012000-65016200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:65012000-65016200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:65012000-65016600	Weak transcription	Brain Angular Gyrus	brain
24	chr14:65012200-65016000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:65012400-65015400	Weak transcription	Brain Anterior Caudate	brain
26	chr14:65012800-65015400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:65013600-65016200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:65013800-65015600	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:65013800-65016600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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