Variant report

Variant	rs2038541
Chromosome Location	chr6:24741637-24741638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24719506..24722494-chr6:24741132..24743826,4	K562	blood:

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10806992	0.86[ASN][1000 genomes]
rs2064977	0.84[ASN][1000 genomes]
rs2145753	0.84[ASN][1000 genomes]
rs2876673	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4712841	0.82[ASN][1000 genomes]
rs4712843	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7762810	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9356945	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9393585	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24739200-24742400	Weak transcription	NHEK	skin
2	chr6:24739200-24742600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:24739200-24742800	Weak transcription	K562	blood
4	chr6:24739400-24742000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:24739400-24742400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:24739400-24742400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:24739400-24742600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:24739600-24742800	Weak transcription	Stomach Mucosa	stomach
9	chr6:24739800-24741800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:24740800-24741800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:24740800-24741800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:24740800-24741800	Enhancers	Osteobl	bone
13	chr6:24740800-24743000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:24740800-24743200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:24741200-24741800	Enhancers	NHDF-Ad	bronchial
16	chr6:24741400-24741800	Enhancers	HMEC	breast
17	chr6:24741400-24742400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:24741400-24742400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:24741400-24742400	Weak transcription	NH-A	brain
20	chr6:24741400-24742400	Weak transcription	NHLF	lung
21	chr6:24741600-24742600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:24741600-24742800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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