Variant report

Variant	rs9393585
Chromosome Location	chr6:24753388-24753389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:24753325-24753682	HepG2	liver:	n/a	n/a
2	CEBPB	chr6:24753280-24753726	MCF-7	breast:	n/a	n/a
3	CEBPB	chr6:24753337-24753557	K562	blood:	n/a	n/a
4	TFAP2C	chr6:24753362-24753729	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr6:24753300-24753711	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr6:24753245-24753616	HepG2	liver:	n/a	n/a
7	CEBPB	chr6:24753320-24753690	A549	lung:	n/a	n/a
8	CEBPB	chr6:24753278-24753680	A549	lung:	n/a	n/a
9	CEBPB	chr6:24753353-24753600	HepG2	liver:	n/a	n/a
10	CEBPB	chr6:24753309-24753690	HepG2	liver:	n/a	n/a
11	TFAP2A	chr6:24753359-24753729	Hela-S3	cervix:	n/a	chr6:24753510-24753525
12	CEBPB	chr6:24753321-24753710	K562	blood:	n/a	n/a
13	CEBPB	chr6:24753349-24753629	A549	lung:	n/a	n/a
14	CEBPD	chr6:24753361-24753643	HepG2	liver:	n/a	n/a
15	CEBPB	chr6:24753323-24753687	IMR90	lung:	n/a	n/a
16	CEBPB	chr6:24753293-24753643	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24719195..24722530-chr6:24752988..24755475,3	MCF-7	breast:
2	chr6:24749479..24751148-chr6:24752124..24753770,2	K562	blood:
3	chr6:24748100..24750979-chr6:24751180..24754304,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10806992	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2038541	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2064977	0.81[ASN][1000 genomes]
rs2145753	0.81[ASN][1000 genomes]
rs2876673	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712843	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7762810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9356945	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv965630	chr6:24745410-24767271	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24752800-24754400	Enhancers	Fetal Intestine Small	intestine
2	chr6:24753000-24753400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:24753000-24753400	Enhancers	Fetal Thymus	thymus
4	chr6:24753000-24753600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:24753000-24753600	Enhancers	Pancreas	Pancrea
6	chr6:24753000-24754400	Enhancers	HepG2	liver
7	chr6:24753200-24754000	Enhancers	Stomach Mucosa	stomach
8	chr6:24753200-24754400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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