Variant report

Variant	rs2039572
Chromosome Location	chr13:88470366-88470367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11838967	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4771393	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4772381	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60747463	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325304	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338846	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987290	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988362	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513938	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9513951	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9518521	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9518540	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9518585	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9645899	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv523153	chr13:88454079-88471137	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv515796	chr13:88470185-88471137	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88466400-88474000	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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