Variant report

Variant	rs9513938
Chromosome Location	chr13:88453100-88453101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11838967	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2039572	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4771393	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4772381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60747463	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325304	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7338846	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7987290	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988362	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9513951	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9518521	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9518540	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9518585	0.93[EUR][1000 genomes]
rs9645899	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562631	chr13:88379124-88470185	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88452800-88456200	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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