Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11999970	0.82[ASN][1000 genomes]
rs13287072	0.88[ASN][1000 genomes]
rs1478058	0.82[ASN][1000 genomes]
rs16938532	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16938533	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869205	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs2039584	0.81[ASN][1000 genomes]
rs2039586	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2383200	0.82[ASN][1000 genomes]
rs2383201	0.84[JPT][hapmap]
rs2891163	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34410759	0.81[ASN][1000 genomes]
rs41517746	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4307419	0.82[ASN][1000 genomes]
rs6475544	0.82[ASN][1000 genomes]
rs7021741	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7028637	0.88[ASN][1000 genomes]
rs7029077	0.88[ASN][1000 genomes]
rs7035252	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7035284	0.82[ASN][1000 genomes]
rs7860632	0.87[ASN][1000 genomes]
rs7865123	0.91[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.83[ASN][1000 genomes]
rs7866337	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs921560	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21673000-21679400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:21673200-21675400	Weak transcription	NHLF	lung
3	chr9:21674200-21677600	Enhancers	HMEC	breast
4	chr9:21674200-21678200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:21674400-21677600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:21674600-21675400	Enhancers	A549	lung
7	chr9:21674600-21676600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:21674600-21677400	Enhancers	NHEK	skin
9	chr9:21674600-21677600	Enhancers	NHDF-Ad	bronchial
10	chr9:21674800-21676800	Enhancers	Hela-S3	cervix
11	chr9:21674800-21677400	Enhancers	HUVEC	blood vessel
12	chr9:21674800-21677600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:21675000-21675600	Enhancers	NH-A	brain
14	chr9:21675000-21676400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:21675000-21677400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:21675000-21677600	Enhancers	Osteobl	bone
17	chr9:21675200-21675800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:21675200-21676200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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