Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13287072	0.86[ASN][1000 genomes]
rs1452657	0.86[ASN][1000 genomes]
rs16938532	0.82[ASN][1000 genomes]
rs16938533	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2383201	0.82[CHB][hapmap]
rs28681140	0.86[ASN][1000 genomes]
rs2891163	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4147137	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41517746	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4629957	0.90[CHB][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67479509	0.97[ASN][1000 genomes]
rs7028637	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7029077	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7035252	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7042962	0.86[ASN][1000 genomes]
rs7045371	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7858072	0.86[ASN][1000 genomes]
rs7860632	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7865123	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7865502	0.80[ASN][1000 genomes]
rs7866337	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7874607	0.86[ASN][1000 genomes]
rs921560	0.82[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21685200-21695600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:21688400-21696200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:21688800-21691400	Enhancers	HMEC	breast
4	chr9:21688800-21691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:21690600-21691600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:21690600-21701200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:21691000-21691400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:21691000-21692200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:21691000-21692400	Weak transcription	NH-A	brain
10	chr9:21691000-21692800	Weak transcription	NHDF-Ad	bronchial
11	chr9:21691000-21695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:21691200-21692400	Weak transcription	A549	lung

Quick Search: