Variant report

Variant	rs7045371
Chromosome Location	chr9:21689840-21689841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13287072	0.89[ASN][1000 genomes]
rs1452657	0.83[ASN][1000 genomes]
rs16938532	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16938533	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1869205	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2020334	0.82[AMR][1000 genomes]
rs2020344	0.82[AMR][1000 genomes]
rs2083560	0.84[AMR][1000 genomes]
rs2383201	0.87[CHB][hapmap];0.82[AMR][1000 genomes]
rs28681140	0.83[ASN][1000 genomes]
rs2891163	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34410759	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4147137	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41517746	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4629957	0.85[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67479509	0.93[ASN][1000 genomes]
rs7021741	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7028436	0.86[AMR][1000 genomes]
rs7028637	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7028950	0.83[AMR][1000 genomes]
rs7029077	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7035252	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7042962	0.83[ASN][1000 genomes]
rs7852691	0.84[AMR][1000 genomes]
rs7858072	0.83[ASN][1000 genomes]
rs7860632	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7865123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7865502	0.83[ASN][1000 genomes]
rs7866337	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7866521	0.81[AMR][1000 genomes]
rs7874607	0.83[ASN][1000 genomes]
rs921560	0.87[CHB][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21680400-21691000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:21685200-21691000	Enhancers	Hela-S3	cervix
3	chr9:21685200-21695600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:21685800-21690200	Enhancers	HUVEC	blood vessel
5	chr9:21686000-21691000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21688400-21696200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:21688800-21690200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:21688800-21690200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:21688800-21690200	Flanking Active TSS	A549	lung
10	chr9:21688800-21691000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:21688800-21691000	Enhancers	HSMM	muscle
12	chr9:21688800-21691000	Enhancers	NH-A	brain
13	chr9:21688800-21691000	Enhancers	NHEK	skin
14	chr9:21688800-21691000	Enhancers	NHLF	lung
15	chr9:21688800-21691000	Enhancers	Osteobl	bone
16	chr9:21688800-21691400	Enhancers	HMEC	breast
17	chr9:21688800-21691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:21689000-21691000	Enhancers	NHDF-Ad	bronchial
19	chr9:21689200-21690000	Enhancers	HSMMtube	muscle
20	chr9:21689400-21690000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:21689400-21691000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:21689600-21690000	Enhancers	Gastric	stomach
23	chr9:21689600-21691200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:21689800-21690600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:21689800-21690600	Weak transcription	Stomach Mucosa	stomach
26	chr9:21689800-21690800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:21689800-21691200	Enhancers	Muscle Satellite Cultured Cells	--

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