Variant report

Variant	rs67479509
Chromosome Location	chr9:21696844-21696845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:82)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:82 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr9:21696706-21696875	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr9:21696700-21696850	HFF-Myc	foreskin:	n/a	n/a
3	CTCF	chr9:21696568-21696919	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr9:21696720-21696870	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr9:21696760-21696910	BE2_C	brain:	n/a	n/a
6	POLR2A	chr9:21696677-21696945	H1-hESC	embryonic stem cell:	n/a	n/a
7	TAF1	chr9:21696537-21696965	H1-hESC	embryonic stem cell:	n/a	n/a
8	YY1	chr9:21696645-21697116	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr9:21696705-21696976	ECC-1	luminal epithelium:	n/a	n/a
10	CTCF	chr9:21696720-21696870	HCM	heart:	n/a	n/a
11	CTCF	chr9:21696768-21696863	MCF-7	breast:	n/a	n/a
12	CTCF	chr9:21696720-21696870	HPAF	blood vessel:	n/a	n/a
13	RAD21	chr9:21696629-21696994	A549	lung:	n/a	n/a
14	MAX	chr9:21696326-21696942	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr9:21696740-21696890	HCFaa	heart:	n/a	n/a
16	CTCF	chr9:21696819-21696858	ProgFib	skin:	n/a	n/a
17	CTCF	chr9:21696760-21696910	AG04449	skin:	n/a	n/a
18	CTCF	chr9:21696649-21696948	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr9:21696754-21696865	HepG2	liver:	n/a	n/a
20	CTCF	chr9:21696720-21696870	HBMEC	blood vessel:	n/a	n/a
21	CTCF	chr9:21696820-21696970	MCF-7	breast:	n/a	n/a
22	CTCF	chr9:21696740-21696890	HAc	cerebellar:	n/a	n/a
23	RAD21	chr9:21696543-21696970	A549	lung:	n/a	n/a
24	CTCF	chr9:21696700-21696850	BE2_C	brain:	n/a	n/a
25	E2F6	chr9:21696292-21696871	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr9:21696740-21696890	GM12865	blood:	n/a	n/a
27	SMC3	chr9:21696774-21696902	Hela-S3	cervix:	n/a	n/a
28	CTCF	chr9:21696720-21696870	HCPEpiC	choroid plexus:	n/a	n/a
29	CTCF	chr9:21696495-21697107	A549	lung:	n/a	n/a
30	CTCF	chr9:21696700-21696850	HRPEpiC	eye:	n/a	n/a
31	RAD21	chr9:21696572-21696977	H1-hESC	embryonic stem cell:	n/a	n/a
32	CTCF	chr9:21696740-21696890	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr9:21696720-21696870	MCF-7	breast:	n/a	n/a
34	MAX	chr9:21696185-21696969	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr9:21696700-21696850	GM12873	blood:	n/a	n/a
36	CTCF	chr9:21696760-21696910	AoAF	blood vessel:	n/a	n/a
37	CTCF	chr9:21696696-21696865	HepG2	liver:	n/a	n/a
38	CTCF	chr9:21696720-21696870	BJ	skin:	n/a	n/a
39	CTCF	chr9:21696700-21696850	HPAF	blood vessel:	n/a	n/a
40	CTCF	chr9:21696714-21696909	A549	lung:	n/a	n/a
41	CTCF	chr9:21696720-21696870	GM12873	blood:	n/a	n/a
42	CTCF	chr9:21696720-21696870	HPF	lung:	n/a	n/a
43	CTCF	chr9:21696624-21696957	A549	lung:	n/a	n/a
44	CTCF	chr9:21696725-21696900	MCF-7	breast:	n/a	n/a
45	CTCF	chr9:21696720-21696870	NHEK	skin:	n/a	n/a
46	CTCF	chr9:21696700-21696850	RPTEC	kidney:	n/a	n/a
47	CTCF	chr9:21696720-21696870	AG04450	lung:	n/a	n/a
48	CTCF	chr9:21696740-21696890	HepG2	liver:	n/a	n/a
49	CTCF	chr9:21696720-21696870	AG04449	skin:	n/a	n/a
50	CTCF	chr9:21696720-21696870	WERI-Rb-1	eye:	n/a	n/a

No data

Variant related genes	Relation type
RN7SL151P	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13287072	0.83[ASN][1000 genomes]
rs1452657	0.89[ASN][1000 genomes]
rs1869205	0.97[ASN][1000 genomes]
rs28681140	0.89[ASN][1000 genomes]
rs4147137	0.93[ASN][1000 genomes]
rs41517746	1.00[ASN][1000 genomes]
rs4629957	0.99[ASN][1000 genomes]
rs7028637	0.83[ASN][1000 genomes]
rs7029077	0.83[ASN][1000 genomes]
rs7042962	0.89[ASN][1000 genomes]
rs7045371	0.93[ASN][1000 genomes]
rs7858072	0.89[ASN][1000 genomes]
rs7860632	0.82[ASN][1000 genomes]
rs7865123	0.87[ASN][1000 genomes]
rs7866337	0.81[ASN][1000 genomes]
rs7874607	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv471290	chr9:21694038-21721939	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892744	chr9:21694039-21746419	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21690600-21701200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:21696400-21697000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr9:21696400-21697200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:21696600-21697000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr9:21696600-21697000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:21696600-21697000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:21696600-21707000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:21696800-21697000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:21696800-21697000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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