Variant report

Variant	rs204223
Chromosome Location	chr6:13693914-13693915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13691833..13693918-chr6:13700022..13701618,2	MCF-7	breast:
2	chr6:13690185..13692536-chr6:13692778..13694739,2	K562	blood:
3	chr6:13614250..13617216-chr6:13693640..13696546,2	MCF-7	breast:
4	chr6:13692267..13695145-chr6:44214144..44216207,2	K562	blood:
5	chr6:13693617..13697413-chr6:13709395..13713836,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096384	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000225921	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs204221	1.00[CEU][hapmap]
rs2841512	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1019422	chr6:13622143-13694781	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13665600-13695200	Weak transcription	NHLF	lung
2	chr6:13667600-13695800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:13668200-13694600	Weak transcription	NHDF-Ad	bronchial
4	chr6:13668800-13694800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:13670000-13701600	Weak transcription	Esophagus	oesophagus
6	chr6:13673400-13695800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:13677800-13699200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:13679000-13694800	Weak transcription	Small Intestine	intestine
9	chr6:13679000-13695600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:13679000-13695800	Weak transcription	Thymus	Thymus
11	chr6:13679000-13695800	Weak transcription	NHEK	skin
12	chr6:13679000-13699800	Weak transcription	Pancreas	Pancrea
13	chr6:13679000-13700400	Weak transcription	Right Ventricle	heart
14	chr6:13679000-13708400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:13679200-13694400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:13679200-13694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:13679200-13696800	Weak transcription	Brain Germinal Matrix	brain
18	chr6:13679400-13695600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:13679600-13703400	Weak transcription	HUVEC	blood vessel
20	chr6:13681000-13694400	Weak transcription	Fetal Brain Female	brain
21	chr6:13681000-13695800	Weak transcription	Liver	Liver
22	chr6:13681000-13695800	Weak transcription	NH-A	brain
23	chr6:13681000-13708600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:13682000-13694600	Weak transcription	Hela-S3	cervix
25	chr6:13683800-13694400	Weak transcription	HSMMtube	muscle
26	chr6:13684800-13695800	Weak transcription	Fetal Lung	lung
27	chr6:13684800-13699800	Strong transcription	Dnd41	blood
28	chr6:13685200-13696000	Weak transcription	Brain Substantia Nigra	brain
29	chr6:13686400-13709600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:13686800-13697400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:13687000-13694800	Weak transcription	Ovary	ovary
32	chr6:13687000-13695800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:13688200-13703200	Weak transcription	Lung	lung
34	chr6:13688400-13694600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:13688800-13703200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:13689000-13697600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:13689200-13696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:13689200-13703200	Weak transcription	Spleen	Spleen
39	chr6:13689600-13695800	Weak transcription	Fetal Brain Male	brain
40	chr6:13689800-13697200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:13689800-13698400	Weak transcription	Psoas Muscle	Psoas
42	chr6:13689800-13702400	Weak transcription	Fetal Stomach	stomach
43	chr6:13690000-13696000	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:13690400-13694400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr6:13690400-13694400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:13690400-13694600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:13690400-13694800	Weak transcription	Fetal Intestine Large	intestine
48	chr6:13690400-13695200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:13690400-13695400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:13690400-13696400	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links