Variant report

Variant	rs2841512
Chromosome Location	chr6:13587980-13587981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13587411..13590228-chr6:13614036..13615957,2	K562	blood:
2	chr6:13585837..13588375-chr6:13613671..13615548,2	MCF-7	breast:
3	chr6:13586392..13588827-chr6:13593586..13598177,4	K562	blood:
4	chr6:13581335..13583858-chr6:13587122..13588754,2	MCF-7	breast:
5	chr6:13580496..13582253-chr6:13587614..13589212,2	MCF-7	breast:
6	chr6:13573003..13576288-chr6:13587126..13592383,6	MCF-7	breast:
7	chr6:13587486..13591723-chr6:13593101..13596768,5	K562	blood:
8	chr6:13587382..13590011-chr6:13598741..13600524,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000225921	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs204223	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2841512	ELOVL2	cis	cerebellum	SCAN
rs2841512	C6orf218	cis	parietal	SCAN
rs2841512	EDN1	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13575600-13588200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:13575600-13588400	Weak transcription	Fetal Brain Male	brain
3	chr6:13575600-13608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:13575600-13613800	Weak transcription	Stomach Mucosa	stomach
5	chr6:13575600-13614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:13575800-13597000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:13575800-13600000	Weak transcription	A549	lung
8	chr6:13575800-13614200	Weak transcription	HUVEC	blood vessel
9	chr6:13575800-13614600	Weak transcription	Right Atrium	heart
10	chr6:13576200-13588000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:13576200-13590800	Weak transcription	Dnd41	blood
12	chr6:13576200-13596600	Weak transcription	HMEC	breast
13	chr6:13576200-13614400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:13576400-13588000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:13576400-13595400	Weak transcription	GM12878-XiMat	blood
16	chr6:13578600-13601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:13580400-13614800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:13580600-13588400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:13582400-13588000	Weak transcription	Psoas Muscle	Psoas
20	chr6:13583000-13590600	Weak transcription	K562	blood
21	chr6:13584400-13588400	Strong transcription	Spleen	Spleen
22	chr6:13585000-13588400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:13585000-13600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:13585200-13588600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:13585600-13613800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:13586800-13588200	Genic enhancers	Left Ventricle	heart
27	chr6:13586800-13588400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:13586800-13588400	Strong transcription	Colon Smooth Muscle	Colon
29	chr6:13586800-13588400	Strong transcription	Rectal Smooth Muscle	rectum
30	chr6:13586800-13588600	Strong transcription	Brain Germinal Matrix	brain
31	chr6:13586800-13588800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:13586800-13589000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:13586800-13589000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:13586800-13589200	Strong transcription	Fetal Thymus	thymus
35	chr6:13586800-13589400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr6:13586800-13589400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:13586800-13589400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:13586800-13589400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:13586800-13589600	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:13586800-13589800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr6:13586800-13589800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr6:13586800-13590000	Strong transcription	Brain Cingulate Gyrus	brain
43	chr6:13586800-13590200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr6:13586800-13590200	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:13586800-13590200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:13586800-13590400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:13586800-13590600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:13586800-13590600	Strong transcription	Fetal Intestine Large	intestine
49	chr6:13586800-13591200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:13586800-13592600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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