Variant report

Variant	rs204299
Chromosome Location	chr6:167489316-167489317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167487932..167489942-chr6:167492963..167495055,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11575082	1.00[EUR][1000 genomes]
rs162296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs204300	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2346158	1.00[EUR][1000 genomes]
rs2769353	1.00[EUR][1000 genomes]
rs41336844	1.00[EUR][1000 genomes]
rs41359447	1.00[EUR][1000 genomes]
rs41378350	1.00[EUR][1000 genomes]
rs41414848	1.00[EUR][1000 genomes]
rs41419544	1.00[EUR][1000 genomes]
rs41450452	1.00[EUR][1000 genomes]
rs41465451	1.00[EUR][1000 genomes]
rs4710216	1.00[EUR][1000 genomes]
rs5006825	1.00[EUR][1000 genomes]
rs57052123	1.00[EUR][1000 genomes]
rs6456162	1.00[EUR][1000 genomes]
rs6456164	1.00[EUR][1000 genomes]
rs6456166	1.00[EUR][1000 genomes]
rs6902566	1.00[EUR][1000 genomes]
rs73256755	1.00[EUR][1000 genomes]
rs7752364	1.00[EUR][1000 genomes]
rs9457241	1.00[EUR][1000 genomes]
rs9457242	1.00[EUR][1000 genomes]
rs9459796	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
6	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
8	nsv464140	chr6:167426681-167492552	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv886943	chr6:167440244-167502638	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv3471970	chr6:167486262-167491260	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3486518	chr6:167486912-167490660	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3471975	chr6:167486987-167490835	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3486516	chr6:167487362-167490560	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2459172	chr6:167487650-167490333	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv6026	chr6:167487874-167489832	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3348427	chr6:167487887-167489798	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv2280955	chr6:167487895-167489725	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3471969	chr6:167487946-167489682	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3357123	chr6:167487971-167489671	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3471971	chr6:167487989-167489642	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3486517	chr6:167487993-167489818	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3471972	chr6:167487999-167489840	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3471973	chr6:167488001-167489647	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3486515	chr6:167488009-167489667	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3471976	chr6:167488071-167489577	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3486519	chr6:167488071-167489577	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv820385	chr6:167488131-167489479	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv1838869	chr6:167488211-167492552	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv1841284	chr6:167488211-167492552	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1842395	chr6:167488211-167492552	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167487000-167494400	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:167487400-167492600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:167487600-167489800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:167487600-167492400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:167488400-167491000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:167489200-167492200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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