Variant report

Variant	rs2043506
Chromosome Location	chr8:11248212-11248213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf12-1	chr8:11247933-11248244	NONHSAT125054

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10503420	0.83[ASN][1000 genomes]
rs12547100	0.91[ASN][1000 genomes]
rs12550129	0.91[ASN][1000 genomes]
rs13260727	0.91[ASN][1000 genomes]
rs13274106	0.91[ASN][1000 genomes]
rs1435274	0.81[ASN][1000 genomes]
rs1435275	0.81[ASN][1000 genomes]
rs2043505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2043507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409756	0.91[ASN][1000 genomes]
rs2437152	0.91[ASN][1000 genomes]
rs2572379	0.91[ASN][1000 genomes]
rs2572380	0.91[ASN][1000 genomes]
rs2572386	0.91[ASN][1000 genomes]
rs2572389	0.81[ASN][1000 genomes]
rs2572394	0.91[ASN][1000 genomes]
rs2572395	0.91[ASN][1000 genomes]
rs2572399	0.91[ASN][1000 genomes]
rs2572400	0.91[ASN][1000 genomes]
rs2736290	0.91[ASN][1000 genomes]
rs2736293	0.91[ASN][1000 genomes]
rs2736294	0.91[ASN][1000 genomes]
rs2736295	0.91[ASN][1000 genomes]
rs2736296	0.91[ASN][1000 genomes]
rs2736297	0.91[ASN][1000 genomes]
rs2736298	0.91[ASN][1000 genomes]
rs2736300	0.91[ASN][1000 genomes]
rs2736302	0.81[ASN][1000 genomes]
rs2736303	0.91[ASN][1000 genomes]
rs2736304	0.91[ASN][1000 genomes]
rs2736310	0.83[ASN][1000 genomes]
rs35009431	0.91[ASN][1000 genomes]
rs4631424	0.91[ASN][1000 genomes]
rs4841524	0.91[ASN][1000 genomes]
rs56222425	0.81[ASN][1000 genomes]
rs57629785	0.91[ASN][1000 genomes]
rs6601584	0.91[ASN][1000 genomes]
rs6980481	0.91[ASN][1000 genomes]
rs7821302	0.91[ASN][1000 genomes]
rs7821459	0.91[ASN][1000 genomes]
rs7828263	0.91[ASN][1000 genomes]
rs7834572	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1022525	chr8:11066191-11309356	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv539474	chr8:11066191-11309356	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1033312	chr8:11126800-11252170	Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv890354	chr8:11176147-11266131	Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv470183	chr8:11236975-11307118	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv3478504	chr8:11243542-11249140	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3523797	chr8:11244392-11248290	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3478502	chr8:11244567-11248515	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3523798	chr8:11244842-11248340	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv465465	chr8:11245064-11307118	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv610275	chr8:11245064-11307118	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11246600-11250200	Weak transcription	Gastric	stomach
2	chr8:11247800-11248400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:11247800-11248600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:11247800-11248600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:11248000-11250200	Weak transcription	Pancreas	Pancrea
6	chr8:11248200-11248400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:11248200-11248600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:11248200-11248600	Flanking Bivalent TSS/Enh	NHEK	skin
9	chr8:11248200-11249000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:11248200-11249000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links