Variant report

Variant	rs2043888
Chromosome Location	chr2:212768779-212768780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12473708	1.00[ASW][hapmap]
rs12477159	1.00[ASW][hapmap]
rs13400161	1.00[LWK][hapmap]
rs13407198	1.00[LWK][hapmap]
rs1561473	1.00[LWK][hapmap]
rs17343458	1.00[LWK][hapmap]
rs17344051	1.00[ASW][hapmap]
rs17415969	1.00[ASW][hapmap]
rs6727114	1.00[LWK][hapmap]
rs7583346	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv584324	chr2:212766614-212773932	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584325	chr2:212768779-212772954	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv584326	chr2:212768779-212773495	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv584327	chr2:212768779-212773569	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1848923	chr2:212768779-212774540	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1847998	chr2:212768779-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1851182	chr2:212768779-212774751	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212765200-212768800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:212765600-212771400	Weak transcription	Brain Substantia Nigra	brain
3	chr2:212766400-212771600	Weak transcription	Brain Anterior Caudate	brain
4	chr2:212766800-212768800	Weak transcription	Fetal Heart	heart
5	chr2:212768000-212769800	Enhancers	Brain Germinal Matrix	brain
6	chr2:212768600-212769000	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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