Variant report

Variant	rs7583346
Chromosome Location	chr2:212678406-212678407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10208623	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1025753	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs11677638	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13006489	1.00[CHB][hapmap]
rs13400161	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs13407198	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs13426904	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13431031	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1439246	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1439247	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1439248	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1561473	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[LWK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16847063	0.95[CEU][hapmap];0.91[CHB][hapmap]
rs2043888	1.00[LWK][hapmap]
rs6727114	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs714393	0.95[CHB][hapmap];0.93[CHD][hapmap]
rs7594604	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links