Variant report

Variant	rs2044133
Chromosome Location	chr11:4157987-4157988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1053189	chr11:4123119-4359044	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1048590	chr11:4133055-4225100	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv540911	chr11:4133055-4225100	Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1053482	chr11:4138062-4276133	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3393349	chr11:4157901-4160749	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv1487861	chr11:4157983-4157987	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4117800-4160200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:4118000-4159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:4121000-4159400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:4122400-4158000	Strong transcription	Dnd41	blood
5	chr11:4122800-4158000	Strong transcription	Fetal Thymus	thymus
6	chr11:4123200-4158000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr11:4126600-4166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:4127600-4158000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:4137800-4158000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:4138200-4160600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:4138600-4158000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr11:4138800-4158000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:4138800-4160400	Strong transcription	Placenta	Placenta
14	chr11:4139800-4158000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:4140400-4158000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:4143200-4159400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:4144000-4159400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:4144200-4158000	Strong transcription	GM12878-XiMat	blood
19	chr11:4144800-4160800	Weak transcription	Colonic Mucosa	Colon
20	chr11:4145400-4158200	Weak transcription	Esophagus	oesophagus
21	chr11:4145600-4159400	Weak transcription	Fetal Heart	heart
22	chr11:4147200-4158200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:4148400-4159200	Weak transcription	Fetal Brain Male	brain
24	chr11:4148600-4164800	Weak transcription	HSMMtube	muscle
25	chr11:4148800-4165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:4149200-4159400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:4149200-4159400	Weak transcription	Brain Anterior Caudate	brain
28	chr11:4149200-4159600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:4149200-4160600	Weak transcription	Spleen	Spleen
30	chr11:4149200-4164600	Weak transcription	Gastric	stomach
31	chr11:4149400-4162200	Weak transcription	Psoas Muscle	Psoas
32	chr11:4149600-4169400	Weak transcription	Pancreas	Pancrea
33	chr11:4149800-4159400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:4149800-4160600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:4151600-4158000	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr11:4151600-4158000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr11:4151600-4158000	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:4151800-4158000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:4152400-4158000	Strong transcription	Thymus	Thymus
40	chr11:4153000-4158000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:4153000-4158000	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:4153000-4158200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:4153000-4158400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:4153400-4158000	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:4153400-4159400	Weak transcription	NHEK	skin
46	chr11:4153400-4165200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:4153600-4159400	Weak transcription	Brain Angular Gyrus	brain
48	chr11:4154000-4158000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:4155600-4159600	Weak transcription	Aorta	Aorta
50	chr11:4155800-4158000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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