Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs176236	0.88[ASN][1000 genomes]
rs2685537	0.88[ASN][1000 genomes]
rs285814	0.95[ASN][1000 genomes]
rs285816	0.95[ASN][1000 genomes]
rs285819	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs285820	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs285824	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs285825	0.90[ASN][1000 genomes]
rs285826	0.90[ASN][1000 genomes]
rs285827	0.90[ASN][1000 genomes]
rs285828	0.88[ASN][1000 genomes]
rs285829	0.87[ASN][1000 genomes]
rs285833	0.88[ASN][1000 genomes]
rs285834	0.88[ASN][1000 genomes]
rs285835	0.84[ASN][1000 genomes]
rs285837	0.89[ASN][1000 genomes]
rs285838	0.87[ASN][1000 genomes]
rs285843	0.83[CHD][hapmap]
rs2926696	0.95[ASN][1000 genomes]
rs627350	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891254	chr8:106060970-106175867	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2045672	NCALD	cis	parietal	SCAN
rs2045672	TMEM74	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106105400-106109800	Weak transcription	K562	blood

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