Variant report

Variant	rs2045814
Chromosome Location	chr4:22543823-22543824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10005993	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10006074	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10024394	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10027719	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10031013	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10938906	0.94[AFR][1000 genomes]
rs11722596	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11731010	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13111990	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1960509	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2061695	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2061696	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2323623	0.90[YRI][hapmap]
rs3911795	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4308352	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4697020	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4697022	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4697317	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4697318	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6448164	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6448169	0.94[AFR][1000 genomes]
rs6815350	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6816538	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6830242	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6836860	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6837058	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6838206	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6839926	0.92[AFR][1000 genomes]
rs7660731	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7664725	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7674533	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7674569	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7674602	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7690673	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22542200-22546600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:22542200-22547400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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