Variant report
| Variant | rs6837058 |
|---|---|
| Chromosome Location | chr4:22535449-22535450 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:22523864..22526257-chr4:22533870..22535996,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10005993 | 0.83[AFR][1000 genomes] |
| rs10006074 | 0.83[AFR][1000 genomes] |
| rs10024394 | 0.92[AFR][1000 genomes] |
| rs10027719 | 0.90[AFR][1000 genomes] |
| rs10031013 | 0.88[AFR][1000 genomes] |
| rs10938906 | 0.90[AFR][1000 genomes] |
| rs11722596 | 0.92[AFR][1000 genomes] |
| rs11731010 | 0.92[AFR][1000 genomes] |
| rs13111990 | 0.85[AFR][1000 genomes] |
| rs1960509 | 0.92[AFR][1000 genomes] |
| rs2045814 | 0.93[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2061695 | 0.83[AFR][1000 genomes] |
| rs2061696 | 0.83[AFR][1000 genomes] |
| rs3911795 | 0.92[AFR][1000 genomes] |
| rs4308352 | 0.83[AFR][1000 genomes] |
| rs4697022 | 0.91[AFR][1000 genomes] |
| rs4697317 | 0.85[AFR][1000 genomes] |
| rs4697318 | 0.83[AFR][1000 genomes] |
| rs6448164 | 0.92[AFR][1000 genomes] |
| rs6448169 | 0.90[AFR][1000 genomes] |
| rs6815350 | 0.83[AFR][1000 genomes] |
| rs6830242 | 0.81[AFR][1000 genomes] |
| rs6836860 | 0.84[AFR][1000 genomes] |
| rs6838206 | 0.83[AFR][1000 genomes] |
| rs6839926 | 0.88[AFR][1000 genomes] |
| rs7660731 | 0.92[AFR][1000 genomes] |
| rs7664725 | 0.92[AFR][1000 genomes] |
| rs7674533 | 0.83[AFR][1000 genomes] |
| rs7674569 | 0.83[AFR][1000 genomes] |
| rs7674602 | 0.83[AFR][1000 genomes] |
| rs7690673 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349061 | chr4:22379581-22887563 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv821634 | chr4:22427074-22865948 | Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:22535000-22536000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
