Variant report

Variant	rs2053062
Chromosome Location	chr5:151169881-151169882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:151164681..151166683-chr5:151167760..151170688,3	K562	blood:
2	chr5:151169544..151171529-chr5:151176198..151177865,2	MCF-7	breast:
3	chr5:151150904..151152970-chr5:151169327..151172160,2	MCF-7	breast:
4	chr5:151168972..151171803-chr5:151186497..151188019,2	K562	blood:
5	chr5:151164080..151166374-chr5:151167044..151170851,3	K562	blood:
6	chr5:151153858..151156919-chr5:151169412..151173368,3	K562	blood:
7	chr5:151159444..151163789-chr5:151168224..151172241,5	K562	blood:
8	chr5:151150392..151153334-chr5:151168974..151172670,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

rs_ID	r²[population]
rs28917168	0.81[ASN][1000 genomes]
rs4958288	1.00[AFR][1000 genomes]
rs6886615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
2	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
3	chr5:151158200-151171200	Weak transcription	Right Ventricle	heart
4	chr5:151161200-151170400	Weak transcription	Brain Anterior Caudate	brain
5	chr5:151161400-151170400	Weak transcription	Brain Substantia Nigra	brain
6	chr5:151164000-151187800	Weak transcription	Stomach Mucosa	stomach
7	chr5:151164000-151196600	Strong transcription	Hela-S3	cervix
8	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:151164400-151189400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:151164400-151194800	Strong transcription	Dnd41	blood
11	chr5:151164600-151197000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:151164800-151171200	Weak transcription	Small Intestine	intestine
13	chr5:151164800-151196600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:151164800-151196800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:151165200-151170600	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:151165200-151173600	Weak transcription	Fetal Heart	heart
17	chr5:151165200-151179400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:151165200-151197200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:151165600-151176200	Strong transcription	Fetal Intestine Small	intestine
20	chr5:151165600-151191600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:151165600-151197200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:151165800-151177600	Strong transcription	HUVEC	blood vessel
23	chr5:151165800-151182000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr5:151165800-151184400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:151165800-151188200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr5:151165800-151192800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr5:151165800-151193000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:151165800-151194800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr5:151165800-151195000	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr5:151165800-151196200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:151165800-151196800	Strong transcription	GM12878-XiMat	blood
32	chr5:151165800-151197000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:151166000-151175000	Strong transcription	Thymus	Thymus
34	chr5:151166000-151178400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:151166000-151183800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:151166000-151184000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:151166000-151184000	Strong transcription	NH-A	brain
38	chr5:151166000-151184400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr5:151166000-151184400	Strong transcription	Placenta	Placenta
40	chr5:151166000-151185000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:151166000-151185800	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr5:151166000-151186000	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr5:151166000-151187200	Strong transcription	NHEK	skin
44	chr5:151166000-151192800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:151166000-151194800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:151166000-151196400	Strong transcription	Fetal Thymus	thymus
47	chr5:151166000-151196600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr5:151166000-151196800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr5:151166000-151197000	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr5:151166200-151170400	Weak transcription	Rectal Smooth Muscle	rectum

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