Variant report

Variant	rs6886615
Chromosome Location	chr5:151135398-151135399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr5:151135001-151135439	HepG2	liver:	n/a	n/a
2	HNF4G	chr5:151134906-151135401	HepG2	liver:	n/a	chr5:151135199-151135213 chr5:151135204-151135216
3	HNF4G	chr5:151134871-151135474	HepG2	liver:	n/a	chr5:151135199-151135213 chr5:151135204-151135216
4	MYBL2	chr5:151134800-151135400	HepG2	liver:	n/a	n/a
5	FOXA1	chr5:151134828-151135433	HepG2	liver:	n/a	n/a
6	FOXA1	chr5:151134817-151135398	HepG2	liver:	n/a	n/a
7	ZNF263	chr5:151134671-151135455	HEK293-T-REx	kidney:	n/a	n/a
8	NR2F2	chr5:151134858-151135490	MCF-7	breast:	n/a	n/a
9	EP300	chr5:151134854-151135402	HepG2	liver:	n/a	chr5:151135175-151135188
10	MYBL2	chr5:151134810-151135424	HepG2	liver:	n/a	n/a
11	FOXA2	chr5:151134773-151135443	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:151130438..151133426-chr5:151135188..151138326,3	MCF-7	breast:
2	chr5:151133710..151135682-chr5:151136684..151139531,3	MCF-7	breast:
3	chr5:151133870..151141079-chr5:151148554..151154544,14	MCF-7	breast:

Variant related genes	Relation type
ATOX1	TF binding region
ENSG00000177556	Chromatin interaction
ENSG00000145907	Chromatin interaction

rs_ID	r²[population]
rs2053062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151120000-151137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:151120200-151137000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:151120200-151137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:151120800-151136800	Weak transcription	Ovary	ovary
5	chr5:151120800-151136800	Weak transcription	Hela-S3	cervix
6	chr5:151120800-151137000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:151123400-151137200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:151124400-151136200	Weak transcription	Colonic Mucosa	Colon
9	chr5:151125000-151136800	Weak transcription	Psoas Muscle	Psoas
10	chr5:151125600-151136200	Weak transcription	Right Atrium	heart
11	chr5:151125800-151136800	Weak transcription	Right Ventricle	heart
12	chr5:151125800-151137000	Weak transcription	Fetal Brain Male	brain
13	chr5:151126000-151135800	Weak transcription	Dnd41	blood
14	chr5:151126000-151136800	Weak transcription	Esophagus	oesophagus
15	chr5:151126000-151136800	Weak transcription	Pancreas	Pancrea
16	chr5:151126200-151136000	Weak transcription	Gastric	stomach
17	chr5:151126200-151136400	Weak transcription	Left Ventricle	heart
18	chr5:151126200-151136400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr5:151126200-151136600	Weak transcription	Fetal Brain Female	brain
20	chr5:151126200-151136800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:151126200-151137000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:151126200-151137200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:151126400-151136400	Weak transcription	Thymus	Thymus
24	chr5:151126400-151136400	Weak transcription	HMEC	breast
25	chr5:151126400-151136600	Weak transcription	Brain Germinal Matrix	brain
26	chr5:151126400-151136600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr5:151126400-151136800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:151126400-151136800	Weak transcription	Fetal Heart	heart
29	chr5:151127200-151136600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:151129800-151136200	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:151129800-151136400	Weak transcription	Brain Anterior Caudate	brain
32	chr5:151129800-151136800	Weak transcription	Brain Angular Gyrus	brain
33	chr5:151129800-151136800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:151130000-151135800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr5:151130000-151136000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:151130000-151136000	Weak transcription	Brain Substantia Nigra	brain
37	chr5:151130000-151136200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr5:151130000-151136400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:151130000-151136400	Weak transcription	Brain Hippocampus Middle	brain
40	chr5:151130200-151135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr5:151131400-151136800	Weak transcription	NH-A	brain
42	chr5:151131600-151135600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr5:151131600-151136200	Weak transcription	NHDF-Ad	bronchial
44	chr5:151132000-151135800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr5:151132800-151136200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:151132800-151136200	Weak transcription	HUVEC	blood vessel
47	chr5:151132800-151137000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:151132800-151137400	Weak transcription	Aorta	Aorta
49	chr5:151133000-151136600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr5:151133000-151136800	Weak transcription	HSMMtube	muscle

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