Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2053783	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2330393	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2330394	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56259675	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72755342	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755347	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72755350	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72757314	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72759356	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72759357	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72759358	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72759360	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72761351	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72761353	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72761354	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72761355	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761378	0.84[AMR][1000 genomes]
rs72761379	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44240400-44241600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:44240400-44241800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:44240400-44241800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:44240600-44241400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:44240600-44241600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:44240600-44242000	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search: