Variant report

Variant	rs56259675
Chromosome Location	chr5:44238604-44238605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2053783	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2053785	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2330393	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2330394	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72755342	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72755347	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72755350	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72757314	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72759356	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72759357	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72759358	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72759360	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72761351	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72761353	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72761354	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72761355	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761358	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761361	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44237800-44238800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:44237800-44238800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:44237800-44239600	Active TSS	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links