Variant report

Variant	rs20545
Chromosome Location	chr14:25076906-25076907
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11158813	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11624387	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs11627296	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11629129	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11844124	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs11851426	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12147128	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12147169	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12147746	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17105315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2332402	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs34530338	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3759639	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs56871173	0.80[EUR][1000 genomes]
rs74039131	0.81[EUR][1000 genomes]
rs74039134	0.80[EUR][1000 genomes]
rs74039181	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901502	chr14:25074711-25101706	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25074800-25077000	Enhancers	GM12878-XiMat	blood
2	chr14:25074800-25077200	Enhancers	Spleen	Spleen
3	chr14:25074800-25077400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:25074800-25077400	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:25074800-25077400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr14:25074800-25078000	Enhancers	Fetal Thymus	thymus
7	chr14:25074800-25079200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr14:25075000-25077000	Enhancers	Primary B cells from cord blood	blood
9	chr14:25075000-25077400	Enhancers	Primary T cells from cord blood	blood
10	chr14:25075200-25077200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr14:25075200-25077200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:25075200-25077400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr14:25075400-25077200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:25075600-25077400	Enhancers	Primary hematopoietic stem cells	blood
15	chr14:25075600-25078400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr14:25076000-25077400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:25076000-25079000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:25076200-25081600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:25076600-25077200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr14:25076600-25077400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:25076600-25077600	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr14:25076600-25077600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:25076600-25078000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:25076800-25077600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:25076800-25078600	Enhancers	Fetal Intestine Large	intestine

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