Variant report
| Variant | rs12147746 |
|---|---|
| Chromosome Location | chr14:25070305-25070306 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11158813 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11624387 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11627296 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11629129 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11844124 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11851426 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12147128 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12147169 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17105315 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs20545 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2332402 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs28479407 | 0.84[EUR][1000 genomes] |
| rs34037718 | 0.81[ASN][1000 genomes] |
| rs34530338 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3759639 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56871173 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs74039126 | 0.84[EUR][1000 genomes] |
| rs74039131 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs74039134 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs74039181 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs8019426 | 0.96[ASN][1000 genomes] |
| rs8021523 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041336 | chr14:24726564-25527319 | Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 2 | nsv542000 | chr14:24726564-25527319 | Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 3 | nsv510631 | chr14:25045183-25172311 | Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:25067600-25074800 | Weak transcription | GM12878-XiMat | blood |
| 2 | chr14:25069800-25074800 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
