Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11622352	1.00[AFR][1000 genomes]
rs11623400	0.83[ASN][1000 genomes]
rs11624387	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs11627296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11629129	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs11844124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11851426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12147128	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs12147169	0.96[ASN][1000 genomes]
rs12147746	0.81[ASN][1000 genomes]
rs17105315	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs20545	1.00[CHB][hapmap]
rs2332402	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs34037718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34530338	0.87[ASN][1000 genomes]
rs3759639	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs56871173	0.83[ASN][1000 genomes]
rs7157597	0.97[AFR][1000 genomes]
rs74039134	0.83[ASN][1000 genomes]
rs74039181	0.96[ASN][1000 genomes]
rs8004094	0.97[AFR][1000 genomes]
rs8019426	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8021523	EDDM3A	cis	cerebellum	SCAN
rs8021523	RNASE1	cis	cerebellum	SCAN
rs8021523	SDR39U1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25065200-25066200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:25065600-25066000	Active TSS	HMEC	breast
3	chr14:25065600-25066200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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